update

runTests.sh

@@ -9,7 +9,9 @@ runTests() {
   JQ=${JQ:-jq}
   export JQ_FLAVOR=${JQ_FLAVOR:-jq}
   echo "Running Tests with JQ=${JQ}"
-  ${JQ} -n -r -L . -L "dropins/${JQ_FLAVOR}" "include \"tests\"; testsMain"
+  ${JQ} -nr \
+    -L "$(realpath .)" -L "$(realpath ./lib)" -L "$(realpath ./dropins)/${JQ_FLAVOR}" \
+    "include \"tests\"; testsMain"
 }
 
 runTests

tool/journalUtils.jq

@@ -1,9 +1,8 @@
 include "dropins";
-include "utils";
 
+import "lib/utilsLib" as utilsLib;
 import "lib/stringLib" as stringLib;
-
-import "journalLib" as journalLib;
+import "lib/journalLib" as journalLib;
 
 def formatExperienceTitle:
   . as $experience |

tool/lib/journalLib.jq

@@ -1,4 +1,4 @@
-import "utils" as utils;
+import "utilsLib" as utilsLib;
 
 def calculateIngestionDose($customUnits):
   . as $ingestion |
@@ -39,11 +39,11 @@ def filterIngestions($substanceFilter; $consumerFilter):
 
 def ingestionsSubstanceNames:
   . as $ingestions |
-  [$ingestions[].substanceName] | utils::orderedUnique;
+  [$ingestions[].substanceName] | utilsLib::orderedUnique;
 
 def ingestionsConsumerNames:
   . as $ingestions |
-  [$ingestions[] | ingestionConsumerName] | utils::orderedUnique;
+  [$ingestions[] | ingestionConsumerName] | utilsLib::orderedUnique;
 
 def ingestionsByConsumer:
   . as $ingestions |
@@ -131,7 +131,7 @@ def filterSortExperiences($customUnits; $substanceFilter; $consumerFilter; $sort
               any(index($ingestion.substanceName))
             )
           ) then $experienceData else null end
-      ] | map(select(. != null));
+      ] | objects;
 
     def filterByConsumerFilter:
       . as $experiencesData |
@@ -181,14 +181,14 @@ def filterSortExperiences($customUnits; $substanceFilter; $consumerFilter; $sort
     elif 
       $sortMethod == "highest-combined-dose"
     then
-      utils::assert($sortOptions.substanceName != null; "substanceName not provided as sortOption") |
+      utilsLib::assert($sortOptions.substanceName != null; "substanceName not provided as sortOption") |
       filterBySubstanceAndConsumer | 
         sort_by(highestCombinedDoseSort, oldToNewSort) |
           reverse
     elif 
       $sortMethod == "highest-dose-for-method"
     then
-      utils::assert($sortOptions.substanceName != null; "substanceName not provided as sortOption") |
+      utilsLib::assert($sortOptions.substanceName != null; "substanceName not provided as sortOption") |
       filterByIngestionMethodForSubstance | 
         sort_by(highestMethodDoseSort, oldToNewSort) |
           reverse
@@ -199,5 +199,5 @@ def filterSortExperiences($customUnits; $substanceFilter; $consumerFilter; $sort
     sortFilter;
 
 def experienceByTitle($name):
-  utils::assert((. | type) == "array"; "experienceByTitle takes a array of experiences as input") |
+  utilsLib::assert((. | type) == "array"; "experienceByTitle takes a array of experiences as input") |
   map(select(.title == $name))[0];

tool/main.jq

@@ -4,12 +4,11 @@ import "lib/typeLib" as typeLib;
 import "lib/argsLib" as argsLib;
 import "lib/stringLib" as stringLib;
 import "lib/tableLib" as tableLib;
+import "lib/utilsLib" as utilsLib;
+import "lib/journalLib" as journalLib;
 
-import "journalLib" as journalLib;
 import "journalUtils" as journalUtils;
 import "types" as types;
-import "utils" as utils;
-
 
 def printExperienceStats($stats; $substanceFilter; $consumerFilter; $withTitle):
   . as $experience |
@@ -262,7 +261,7 @@ def main:
         $options.sortMethod;
         $options.sortOptions
       ) |
-      if ($options.sortFilter != null) then utils::sortFilterFromString($options.sortFilter) end | 
+      if ($options.sortFilter != null) then utilsLib::sortFilterFromString($options.sortFilter) end | 
       printExperiences(
         $exportData.customUnits;
         $options.substanceFilter;

tool/tests.jq

@@ -2,6 +2,7 @@ include "dropins";
 
 import "lib/testLib" as testLib;
 import "lib/typeLib" as typeLib;
+import "lib/journalLib" as journalLib;
 
 import "journalUtils" as journalUtils;
 
@@ -11,7 +12,7 @@ def journalUtilsTests:
   testLib::expectPassed(testLib::runTest(
     "invalid input to experienceByTitle";
     (
-      null | journalUtils::experienceByTitle("Test")
+      null | journalLib::experienceByTitle("Test")
     );
     . == "experienceByTitle takes a array of experiences as input";
     true
@@ -19,7 +20,7 @@ def journalUtilsTests:
   testLib::expectPassed(testLib::runTest(
     "experience not found";
     (
-      $exportDataArray[0].experiences | journalUtils::experienceByTitle("Test")
+      $exportDataArray[0].experiences | journalLib::experienceByTitle("Test")
     );
     . == null;
     false